Depends what's out, if you've got any camber or toe then you're looking at a bent axle or tube, if it's an axle it will change with rotation.
Tubes warp when the various mounting brackets are welded on, usually you have a big length of round steel solid bar like an inch and a half thick that gets fed in one tube, through the centre and out the other, with adapters that neatly fit the bar and all four bearing journals. If the tubes are bent you can heat and press them back straight, I saw a website somewhere that showed how to do it, hang on I'll see if I can find it...
Yep, have a look at this: http://www.crankshaf...ear_end_housing
If the diff is straight but not sitting square, obviously you can get adjustable trailing arms, but they're not cheap, you can also get eccentric bushes, which come in several different offsets, but it's a tedious process especially if you're only guessing which bush you need.
BTW, those eccentric bushes aren't supposed to be use in front LCAs but they do fit, I believe 76lxhatch fitted them to gain a little extra positive caster, or maybe he made his own, I can't remember now?
One other really cheap mod you can do which will make a bit of difference is simply boxing in the rear trailing arms by welding a strip of steel along the bottom of them (you can even get all fancy and hole-saw holes in them too if you like). Standard arms are remarkably weak and this will help stop them flexing.
I guess if the diff isn't sitting square you'd be silly not to look for a bent trailing arm first too?
Also, have a good look at where the rear trailing arms mount to the floor, the lower mounts are fairly beefy because the lower arms are what push the car forward under acceleration, the problem is with the upper arm mounts.
Believe it or not, the upper arms actually pull away from the body under power (think of how a drag car wheel-stands, something has to actually pull the front of the car up into the air, that's the upper trailing arms at work).
There's a whole heap of other rear suspension geometry to do with rear-steer, anti-squat, roll centre, etc. but that's not really something you can do much about if you're using the factory mounting points so let's not even go there!